Crystallographic software free download

Calculates the f'' and f' contributions to anomalous scattering and determines X-ray energies where f'' is maximum and f' is minimum, i.

It generates a customized input function from user-specified variable names in a DDL dictionary. This function can be then be linked into C or Fortran programs. Bison, Flex, Perl and C must already be installed. Uses the NCBI toolkit. Multiple sequence alignment. The code is freely available and carefully commented, which makes it easily modifiable.

CMPR Multipurpose program that can be used for displaying diffraction data, manual indexing and peak fitting and other nifty stuff. CMPR is designed to be expanded by the users. Cn3D Cn3D is a new structure viewer that is based on the Entrez data model. It is a client-server application - meaning you can immediately fetch structures you wish to see over the Internet in a single session. The program has been designed to provide a flexible multi-level hierachical approach for the most commonly used algorithms in macromolecular structure determination.

Highlights include heavy atom searching, experimental phasing including MAD and MIR , density modification, crystallographic refinement with maximum likelihood targets, and NMR structure calculation using NOEs, J-coupling, chemical shift, and dipolar coupling data.. Offers functionality that can significantly increase the speed of the structure solution process.

Integrates X-ray diffraction and NMR spectroscopic data with molecular mechanics, dynamics, and energy minimization to aid in the solution of three-dimensional molecular structures. ConInspector Advanced consensus definition and recognition. This method of display leads to more easily interpretable pictures and can dispense with the need for stereo-pair presentation. Contour wafer mapping, texture mapping and reciprocal space mapping in an easy-to-use and easy-to-understand form.

Convert User friendly powder XRD data inter-conversion software. Convert is now called Powder for Windows Converte Converts fractional coordinates to cartesian coordinates and cartesian coordinates to fractional coordinates for all crystal systems. ConvX For converting between different X-ray powder diffraction file formats. CoreSearch To identify and delimitate consensus elements.

Its robustness, comprehensiveness, speed and performance makes CORINA a perfect application to convert large chemical datasets or databases. COSET A new computer program which implements left coset decomposition algorithms to derive possible merohedral and pseudo-merohedral twin laws. The functions avaliable include quasioptical filtering, correction for the CTF, crystallographic symmetry averaging, and others.

Crunch Direct methods method using Karle-Hauptmann matrices instead of triplet relation for solving difficult structures. Include simulation of powder diffractograms and precession photographs; transformation and reorientation of anisotropic temperature factors and magnetic or other vectors; computation of bond lengths and angles; and transformation of hkl index data, such as diffraction data.

Provides links to a number of indexing programs. Replaces Crys2run CrysPage Program to facilitate the rapid evaluation of high-throughput crystallization trials by experienced crystallographers. Chemical space can be searched and selected drops can be displayed for detailed inspection.

CrysPage, including helper scripts, documentation and an example, is available from the authors upon request lesser helix. It is using two basic approaches for this purpose - the fingerprint and the RMSD approach.

Result of the comparison is a similarity matrix and dendrogram. Crystal Diffract To simulate x-ray and neutron powder diffraction patterns from CrystalMaker binary files - or directly from CrystalMaker via a menu command. Detailed measurement, indexing and manipulation of diffraction patterns is possible in real time, with extensive control over diffraction parameters. CrystalExplorer Designed principally to calculate, display and colour the Hirshfeld surface for a chosen molecule, or cluster or atoms, within a crystal.

Designed by, Dr. Ideal for teaching too!. Crystallographica Search-Match Search match program for use with the International Centre for Diffraction Data's PDF databases: search algorithm for multi-phase identification, search using raw data, peak data or a combination of the two, Boolean PDF card retrieval and display, interface to Crystallographica, peak search and background subtraction tools, powder pattern simulation.

Currently includes a unit cell toolbox, a space group toolbox sgtbx and an element toolbox for the handling of scattering factors and other element properties. CrystalMaker CrystalMaker is an efficient and user-friendly way to visualise crystal and molecular structures.

Crystal Monitor Relational database application that captures and organizes all aspects of a crystlalization trial, from base chemicals through the collection and analysis of trial observations.

Video tutorials showing how to work with the toolbox are available here. You can see one-minute illustrative videos as well as an minute tutorial covering basic controls and abilities of diffractGUI, ringGUI and cellViewer. If you are new to CrysTBox, please fill in the application form to get download links. If you have an old CrysTBox version you would like to update, please fill in your e-mail in the update form.

Complete license statement can be found here. The installers are normally built for Windows platform in bit and bit version. The installation procedure should be quite simple and intuitive. Still, If you happened to face any troubles during the installation or afterwards, you may find some useful tips here.

Here you can find some publications about CrysTBox. If you find the software useful for your research, please cite it. Thank you. More features, more tools, more CrysTBox. Journal of Applied Crystallography , 50 4 , Klinger, L. Jager and M. A working version of SImPA version 1. Contact Serge Desgreniers sdesgren uOttawa. Refinement of multible phases, of the wave vector components of a modulated structures, Lorentz polarisation Single Crystal To visualize the reciprocal lattice, simulate electron diffraction patterns and display stereographic projections.

SingleCrystal reads from CrystalMaker binary files - or loads data directly from CrystalMaker via a menu command. Real-time manipulation and measurement is possible. Single Crystal 4 SingleCrystal is a tool for understanding the diffraction properties of crystalline materials.

Designed for physicists, chemists, material scientists and geologists, SingleCrystal 4 can simulate the results of tedious laboratory diffraction experiments - in real time, and from the comfort of your laptop.

Observed electron diffraction images can also be analysed and their crystal orientations calculated - saving hours of painstaking measurement and analysis. SIR Ab initio resolution of macromolecular crystal structures. SIR the latest program of the SIR suite for crystal structure solution of small, medium and large structures. The program contains tools for crystal structure refinement and for the study of three-dimensional electron-density maps via suitable viewers SIR97 Evolution of SIR Integrated package of computer programs for the solution and refinement of crystal structures using single crystal data.

SITCOM Facilitates the comparison of macromolecular substructures from different sources for validation purposes and to construct a consensus model containing sites from different substructures. Situs Program package for the docking of protein crystal structures to single-molecule, low-resolution maps from electron microscopy. Developed to provide a robust and quantitative method for the localization of biomolecular subunits in low-resolution data.

Use of single-molecule density maps that can be obtained by subtraction of maps from specimens of variable subunit composition. The central algorithm is a topology-representing neural network to correlate features within the structural data sets. SnB Based on Shake-and-Bake, a dual-space direct methods procedure for determining crystal structures from X-ray diffraction data.

SOWOS Program for the determination of the Wulff construction starting solely from the directions of the bounding facets. SP2 A computer program for plotting stereographic projection and exploring crystallographic orientation relationships. Space Group Explorer Gives you immediate access to much of the information which is available in the International Tables for Electron Crystallography, on-line in your own PC.

SPACER A program to display space-group information for a conventional and nonconventional coordinate system Spartan Spartan Student Edition is a serious molecular modeling package for teaching, and learning, chemistry. Combining Spartan 's easy-to-use graphical interface with a targeted set of computational engines, the Student Edition provides fundamental molecular modeling utilities supporting the organic chemistry curriculum.

Spartan'14 offers all features and methods included in the Spartan Essential Edition , and in collaboration with Q-Chem, provides a full range of post-Hartree—Fock methods including density functional, Moller Plesset, thermochemistry recipes including the new T1 procedure , and an assortment of advanced correlated approaches. Spartan'14 Parallel Suite provides all the features of Spartan'14 , but adds: multi-core parallel processing for ab initio , density functional, RI-MPT, and T1 calculations, the full SMD and SSPD data collections, and the ability to act as a compute server for other Spartan'14 licenses or the iSpartan molecular modeling app.

The Spartan'14 Parallel Suite is the dominant version used in academic, government, and commercial research. Software directory Search for software Add new software entry Add new entry in-house Software museum Old manuals Crystallographic neXus. SAPI Multan-based program package: i Random-starting multisolution direct methods; ii Automatic Patterson analysis for heavy-atom containing structures; iii Combination of Patterson and direct methods; iv Automatic detection and solution of superstructures; v Resoving enantiomorphous phase ambiguity; vi Solving heavy-atom substructures for proteins.

SaxsMDView The program performs a three-dimensional graphical representation for protein molecules along with the force vector or vector potential applying to each atom. Searchmatch Search match program for use with the International Centre for Diffraction Data's Powder Diffraction File: - powerful search algorithm for multi-phase identification - lightning-fast search using raw data, peak data or a combination of the two - fully integrated Boolean PDF card retrieval and display - user database, with interface to Crystallographica - fully integrated peak search and background subtraction tools - powder pattern simulation, including multi-phase mixtures - reads most common file formats - if not just ask!

Peak fitting, see CCP ShakePSD To solve the structures of organic compounds automatically. The program contains tools for crystal structure refinement and for the study of three-dimensional electron-density maps via suitable viewers.

Spartan Spartan Student Edition is a serious molecular modeling package for teaching, and learning, chemistry. SPASM Tool for pattern recognition in protein structures at the level of assemblies of individual residues. Gives you immediate access to much of the information which is available in the International Tables for Electron Crystallography, on-line in your own PC.

SPEC tools for acquiring, analyzing and plotting data. Madsen csiro. SrRietveld SrRietveld extends and automates the popular existing Rietveld programs FullProf and GSAS to facilitate studies that involve many refinements, such as the analysis of large numbers of data sets.